Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| putative metal-dependent hydrolase | IZT61_13105 | O31562 | - | 3235952 - 3236473 | 20171.2 |
| hypothetical protein | IZT61_13110 | Not Available | + | 3236632 - 3237819 | 44129.2 |
| peroxiredoxin | IZT61_13115 | P21762 | + | 3238143 - 3238775 | 23470.5 |
| thioredoxin family protein | IZT61_13120 | Q6Z4I3 | + | 3238791 - 3239099 | 11490.8 |
| hypothetical protein | IZT61_13125 | Not Available | + | 3239099 - 3239347 | 8980.78 |
| phosphoenolpyruvate carboxylase | IZT61_13130 | Q0AH90 | - | 3239961 - 3242546 | 98384.1 |
| dha2 family efflux mfs transporter permease subunit | IZT61_13135 | P0AEJ1 | - | 3243008 - 3244555 | 56223.8 |
| hlyd family secretion protein | IZT61_13140 | P0DPR6 | - | 3244567 - 3245604 | 37221.1 |
| tolc family protein | IZT61_13145 | Q8G0Y6 | - | 3245613 - 3246932 | 48350.8 |
| tetr/acrr family transcriptional regulator | IZT61_13150 | P94548 | - | 3246929 - 3247555 | 23657.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.