Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| peptidylprolyl isomerase | IZT61_13055 | Q5XAQ1 | - | 3228950 - 3229651 | 26584.2 |
| hypothetical protein | IZT61_13060 | Not Available | + | 3229744 - 3230148 | 14810.2 |
| heavy-metal-associated domain-containing protein | IZT61_13065 | Not Available | + | 3230275 - 3230811 | 19367.6 |
| hypothetical protein | IZT61_13070 | Not Available | + | 3230815 - 3231627 | 30314.5 |
| duf3347 domain-containing protein | IZT61_13075 | Not Available | + | 3231708 - 3232211 | 18397.6 |
| helix-turn-helix transcriptional regulator | IZT61_13080 | P96660 | + | 3232211 - 3232771 | 20946.5 |
| ycei family protein | IZT61_13085 | Q6D6A3 | + | 3232939 - 3233511 | 20904.0 |
| 4,5-dopa dioxygenase extradiol | IZT61_13090 | P24197 | + | 3233587 - 3234411 | 30724.9 |
| cation transporter | IZT61_13095 | Q4L971 | + | 3234536 - 3235255 | 26151.4 |
| hypothetical protein | IZT61_13100 | Not Available | - | 3235608 - 3235844 | 8721.33 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.