Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| protein-glutamate o-methyltransferase cher | IZT61_13005 | Q88GG4 | + | 3216347 - 3217165 | 31923.4 |
| chemotaxis protein cheb | IZT61_13010 | P62642 | + | 3217150 - 3217734 | 21252.8 |
| response regulator | IZT61_13015 | B2SB45 | + | 3217754 - 3218116 | 13571.2 |
| hypothetical protein | IZT61_13020 | Not Available | - | 3218315 - 3220123 | 68925.7 |
| hypothetical protein | IZT61_13025 | Not Available | - | 3221040 - 3222827 | 66713.3 |
| trna (n6-isopentenyl adenosine(37)-c2)-methylthiotransferase miab | IZT61_13030 | B3ES11 | + | 3223066 - 3224574 | 56011.5 |
| sigma 54-interacting transcriptional regulator | IZT61_13035 | P10046 | + | 3224819 - 3226063 | 46556.4 |
| lpte family protein | IZT61_13040 | Not Available | + | 3226071 - 3226622 | 20122.2 |
| hypothetical protein | IZT61_13045 | Not Available | + | 3226683 - 3227738 | 40237.2 |
| preprotein translocase subunit secg | IZT61_13050 | Not Available | + | 3227754 - 3228113 | 12119.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.