Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | IZT61_12955 | Not Available | + | 3203948 - 3204316 | 13272.8 |
| hypothetical protein | IZT61_12960 | Not Available | - | 3204787 - 3205221 | 15958.8 |
| hotdog fold thioesterase | IZT61_12965 | Q9I3A4 | - | 3205279 - 3205701 | 15460.8 |
| dinb family protein | IZT61_12970 | Not Available | - | 3205691 - 3206200 | 19872.7 |
| hamp domain-containing histidine kinase | IZT61_12975 | Q04850 | - | 3206181 - 3207395 | 46817.8 |
| glutamate--trna ligase | IZT61_12980 | A6L0E8 | + | 3207612 - 3209120 | 56315.0 |
| neutral zinc metallopeptidase | IZT61_12985 | P64431 | + | 3210226 - 3211071 | 31134.3 |
| hybrid sensor histidine kinase/response regulator | IZT61_12990 | Q45614 | + | 3211176 - 3212309 | 42751.6 |
| response regulator | IZT61_12995 | Q54YZ9 | + | 3212327 - 3215914 | 133949.0 |
| response regulator | IZT61_13000 | B2SB45 | + | 3215975 - 3216346 | 13475.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.