Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| inorganic phosphate transporter | IZT61_12705 | O30499 | - | 3150166 - 3151176 | 35650.4 |
| duf47 domain-containing protein | IZT61_12710 | O34454 | - | 3151189 - 3151830 | 24341.2 |
| sensor histidine kinase | IZT61_12715 | P23545 | - | 3152094 - 3153119 | 39320.7 |
| tigr03915 family putative dna repair protein | IZT61_12720 | Not Available | - | 3153202 - 3153963 | 30146.0 |
| putative dna modification/repair radical sam protein | IZT61_12725 | Not Available | - | 3154237 - 3155496 | 47740.9 |
| hypothetical protein | IZT61_12730 | Not Available | - | 3155583 - 3156122 | 21138.7 |
| hd domain-containing protein | IZT61_12735 | P54168 | - | 3156197 - 3156841 | 24261.9 |
| helix-turn-helix transcriptional regulator | IZT61_12740 | P45902 | - | 3156908 - 3157189 | 10577.7 |
| dmt family transporter | IZT61_12745 | Q4QPI4 | + | 3157642 - 3158198 | 20771.4 |
| hypothetical protein | IZT61_12750 | Not Available | - | 3158195 - 3158689 | 19442.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.