Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hsp20/alpha crystallin family protein | IZT61_12655 | P80485 | - | 3141670 - 3142110 | 16412.3 |
| hypothetical protein | IZT61_12660 | O31853 | - | 3142196 - 3142567 | 13679.3 |
| hypothetical protein | IZT61_12665 | Not Available | - | 3142572 - 3142805 | 8853.42 |
| hypothetical protein | IZT61_12670 | Not Available | - | 3142810 - 3143079 | 10369.0 |
| hypothetical protein | IZT61_12675 | Not Available | - | 3143972 - 3144277 | 11693.4 |
| sigma-70 family rna polymerase sigma factor | IZT61_12680 | O05404 | - | 3144325 - 3144876 | 21725.3 |
| duf4197 domain-containing protein | IZT61_12685 | Not Available | - | 3145104 - 3145862 | 27415.3 |
| von willebrand factor type a domain-containing protein | IZT61_12690 | P76481 | - | 3145849 - 3147759 | 68997.7 |
| sigma-70 family rna polymerase sigma factor | IZT61_12695 | O07582 | + | 3147861 - 3148439 | 22436.9 |
| carboxypeptidase-like regulatory domain-containing protein | IZT61_12700 | Not Available | + | 3148432 - 3149718 | 46400.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.