Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| susc/raga family tonb-linked outer membrane protein | IZT61_00060 | T2KMI3 | + | 10118 - 13696 | 132692.0 |
| ragb/susd family nutrient uptake outer membrane protein | IZT61_00065 | A7LXT5 | + | 13708 - 15069 | 51307.2 |
| discoidin domain-containing protein | IZT61_00070 | Not Available | + | 15118 - 16038 | 33450.1 |
| ahpc/tsa family protein | IZT61_00075 | Q65HX8 | + | 16099 - 17238 | 41761.0 |
| hypothetical protein | IZT61_00080 | Not Available | + | 17313 - 17975 | 25163.6 |
| sigma-70 family rna polymerase sigma factor | IZT61_00085 | Q45585 | + | 18575 - 19174 | 22712.6 |
| ahpc/tsa family protein | IZT61_00090 | O31820 | + | 19488 - 20576 | 41389.8 |
| methylated-dna--[protein]-cysteine s-methyltransferase | IZT61_00095 | Q8TI34 | - | 20770 - 21249 | 17762.4 |
| dmt family transporter | IZT61_00100 | Q8UGX7 | - | 21302 - 21815 | 19639.3 |
| rna-binding protein | IZT61_00105 | P19683 | - | 22252 - 22581 | 12089.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.