Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| phoh family protein | IZT61_00910 | P46343 | + | 200713 - 201672 | 35174.0 |
| phosphoribosylaminoimidazolesuccinocarboxamide synthase | IZT61_00915 | Q11TT6 | + | 201903 - 202847 | 35318.2 |
| stas domain-containing protein | IZT61_00920 | Not Available | + | 202883 - 203260 | 14062.8 |
| ribonuclease z | IZT61_00925 | Q11TT4 | + | 203330 - 204235 | 34704.6 |
| mce family protein | IZT61_00930 | P64605 | - | 204842 - 205795 | 34216.4 |
| n-acetylmuramoyl-l-alanine amidase | IZT61_00935 | P63884 | - | 205977 - 206750 | 28458.6 |
| n-acetylmuramoyl-l-alanine amidase | IZT61_00940 | P63884 | - | 206761 - 207621 | 32153.7 |
| lps-assembly protein lptd | IZT61_00945 | Q1QA28 | + | 207696 - 210353 | 98104.3 |
| competence/damage-inducible protein a | IZT61_00950 | Q5LCF4 | + | 210357 - 211601 | 45598.4 |
| 2-oxo acid dehydrogenase subunit e2 | IZT61_00955 | P37942 | + | 211658 - 213010 | 48879.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.