Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| bama/tama family outer membrane protein | IZT61_08655 | Q9K1H0 | + | 2177246 - 2179561 | 87165.1 |
| yihy/virulence factor brkb family protein | IZT61_08660 | A8FPZ2 | + | 2179570 - 2180592 | 37222.1 |
| response regulator | IZT61_08665 | Q8D5Z6 | - | 2180715 - 2182856 | 81232.8 |
| type iia dna topoisomerase subunit b | IZT61_08670 | Q59189 | - | 2182891 - 2184759 | 70747.2 |
| apc family permease | IZT61_08675 | O34739 | + | 2185108 - 2186445 | 48446.4 |
| dead/deah box helicase | IZT61_08680 | P25888 | + | 2186676 - 2187974 | 47804.2 |
| formimidoylglutamase | IZT61_08685 | P0CZ66 | + | 2188223 - 2189218 | 36089.3 |
| dmt family transporter | IZT61_08690 | Q11VK7 | - | 2189400 - 2190620 | 46552.4 |
| dmt family transporter | IZT61_08695 | P45736 | - | 2190639 - 2190968 | 12885.4 |
| dmt family transporter | IZT61_08700 | Q11VK7 | - | 2191041 - 2192651 | 61546.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.