Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| polysaccharide biosynthesis tyrosine autokinase | IZT61_08555 | O52788 | + | 2152135 - 2154450 | 85115.5 |
| mate family efflux transporter | IZT61_08560 | Not Available | + | 2154462 - 2156009 | 57560.2 |
| glycosyltransferase family 2 protein | IZT61_08565 | P9WKW8 | + | 2156017 - 2156778 | 30319.9 |
| o-antigen ligase family protein | IZT61_08570 | Not Available | + | 2156856 - 2158106 | 48742.7 |
| hypothetical protein | IZT61_08575 | Not Available | + | 2158121 - 2159164 | 40703.7 |
| glycosyltransferase | IZT61_08580 | Q11068 | + | 2159205 - 2160131 | 35879.0 |
| glycosyltransferase | IZT61_08585 | Q58577 | + | 2160131 - 2161282 | 42858.2 |
| wecb/taga/cpsf family glycosyltransferase | IZT61_08590 | P27620 | - | 2161754 - 2162491 | 28236.9 |
| sigma-70 family rna polymerase sigma factor | IZT61_08595 | Q3IYV6 | + | 2162711 - 2163310 | 22957.7 |
| hypothetical protein | IZT61_08600 | Not Available | + | 2163624 - 2163887 | 9824.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.