Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| response regulator transcription factor | IZT61_08455 | Q2YZ42 | + | 2128462 - 2129106 | 24067.3 |
| sigma-70 family rna polymerase sigma factor | IZT61_08460 | Q7AKG9 | + | 2129366 - 2129893 | 20477.6 |
| duf72 domain-containing protein | IZT61_08465 | O32135 | + | 2131667 - 2132401 | 28614.9 |
| mfs transporter | IZT61_08470 | Not Available | + | 2132449 - 2133939 | 55114.8 |
| hypothetical protein | IZT61_08475 | Not Available | + | 2134147 - 2134335 | 7431.31 |
| carbamoyltransferase | IZT61_08480 | P74178 | + | 2134633 - 2136408 | 66278.6 |
| glycosyltransferase | IZT61_08485 | D4GYH2 | + | 2136347 - 2137318 | 37269.9 |
| glycosyltransferase family 9 protein | IZT61_08490 | Q9R9D5 | + | 2137720 - 2138724 | 37462.3 |
| glycosyltransferase family 9 protein | IZT61_08495 | P45042 | - | 2138630 - 2139748 | 41827.5 |
| d-glycero-beta-d-manno-heptose 1-phosphate adenylyltransferase | IZT61_08500 | Q7VFZ3 | - | 2140011 - 2141504 | 54030.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.