Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| duf2911 domain-containing protein | IZT61_08305 | Not Available | - | 2082560 - 2083081 | 19018.9 |
| sodium:solute symporter | IZT61_08310 | Q9Y289 | - | 2083116 - 2084807 | 62606.0 |
| pig-l family deacetylase | IZT61_08315 | Q6F4N1 | - | 2085297 - 2087765 | 91430.0 |
| sigma-54-dependent fis family transcriptional regulator | IZT61_08320 | Q06065 | + | 2088440 - 2089777 | 49724.4 |
| m1 family metallopeptidase | IZT61_08325 | Q974N6 | + | 2090019 - 2091605 | 59970.6 |
| potassium-transporting atpase subunit f | IZT61_08330 | Not Available | + | 2092513 - 2092590 | 2966.95 |
| potassium-transporting atpase subunit kdpa | IZT61_08335 | A5FIF9 | + | 2092595 - 2094313 | 62088.7 |
| potassium-transporting atpase subunit kdpb | IZT61_08340 | Q9RZP0 | + | 2094409 - 2096436 | 71752.7 |
| potassium-transporting atpase subunit kdpc | IZT61_08345 | A5FIF7 | + | 2096751 - 2097311 | 19759.2 |
| porin | IZT61_08350 | Not Available | + | 2097396 - 2098466 | 39273.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.