Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| nicotinamide mononucleotide transporter | IZT61_08255 | D2ZZC1 | - | 2067157 - 2067780 | 23936.9 |
| dna gyrase/topoisomerase iv subunit a | IZT61_08260 | O51066 | - | 2068486 - 2071335 | 106549.0 |
| hypothetical protein | IZT61_08265 | Not Available | - | 2071692 - 2071883 | 6946.22 |
| hlyd family efflux transporter periplasmic adaptor subunit | IZT61_08270 | P16534 | - | 2071979 - 2073262 | 49081.9 |
| peptidase domain-containing abc transporter | IZT61_08275 | P59852 | - | 2073352 - 2075556 | 82641.2 |
| thioredoxin family protein | IZT61_08280 | P47938 | - | 2075646 - 2076926 | 49439.6 |
| hypothetical protein | IZT61_08285 | Not Available | - | 2077263 - 2077454 | 6599.01 |
| thioredoxin domain-containing protein | IZT61_08290 | Not Available | - | 2077596 - 2079182 | 60104.0 |
| response regulator transcription factor | IZT61_08295 | Q8EDD7 | + | 2079463 - 2080146 | 26063.5 |
| glycoside hydrolase family 92 protein | IZT61_08300 | O86365 | - | 2080241 - 2082322 | 78535.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.