Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | IZT61_08205 | Not Available | - | 2058794 - 2059765 | 36191.2 |
| pspc domain-containing protein | IZT61_08210 | Not Available | - | 2059771 - 2060460 | 25767.7 |
| sdr family oxidoreductase | IZT61_08215 | Q8CN40 | - | 2060503 - 2061192 | 25343.4 |
| abc transporter permease | IZT61_08220 | Q1RGU3 | + | 2061335 - 2062069 | 26074.6 |
| abc transporter atp-binding protein | IZT61_08225 | P30769 | + | 2062069 - 2062821 | 28093.1 |
| duf2281 domain-containing protein | IZT61_08230 | Not Available | + | 2062866 - 2063084 | 8278.77 |
| type ii toxin-antitoxin system vapc family toxin | IZT61_08235 | Not Available | + | 2063084 - 2063467 | 14924.2 |
| class i sam-dependent methyltransferase | IZT61_08240 | Q07ZR3 | + | 2063471 - 2064352 | 33323.1 |
| hypothetical protein | IZT61_08245 | Not Available | + | 2064459 - 2065508 | 39246.9 |
| acyl-coa dehydrogenase | IZT61_08250 | D0C6T7 | - | 2065971 - 2067059 | 40894.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.