Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| two-component sensor histidine kinase | IZT61_08155 | P23545 | - | 2043998 - 2044864 | 32666.0 |
| glutamate-1-semialdehyde 2,1-aminomutase | IZT61_08160 | B1KHF6 | - | 2045342 - 2046712 | 49539.2 |
| porphobilinogen synthase | IZT61_08165 | P77969 | - | 2046864 - 2047832 | 35955.2 |
| hydroxymethylbilane synthase | IZT61_08170 | C6BYB7 | - | 2048336 - 2049916 | 58436.1 |
| glutamyl-trna reductase | IZT61_08175 | B8FLI1 | - | 2050220 - 2051446 | 46544.4 |
| alpha/beta hydrolase | IZT61_08180 | Q48MQ7 | + | 2051969 - 2052793 | 30401.0 |
| mechanosensitive ion channel | IZT61_08185 | P0AAT4 | - | 2052838 - 2054118 | 48702.5 |
| (e)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase | IZT61_08190 | A6LGR5 | - | 2054271 - 2056346 | 76734.2 |
| atp-binding protein | IZT61_08195 | Q59031 | + | 2056520 - 2057716 | 45376.6 |
| rdd family protein | IZT61_08200 | P42108 | - | 2058030 - 2058644 | 23331.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.