Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| outer membrane beta-barrel protein | IZT61_08105 | Not Available | - | 2036352 - 2037134 | 29367.8 |
| hypothetical protein | IZT61_08110 | Not Available | - | 2037249 - 2038001 | 27572.2 |
| rna polymerase sigma factor | IZT61_08115 | A0R2D4 | - | 2037982 - 2038551 | 21740.5 |
| hypothetical protein | IZT61_08120 | Not Available | - | 2039045 - 2040196 | 44664.2 |
| copd family protein | IZT61_08125 | P72793 | - | 2040418 - 2040972 | 21346.4 |
| type ii toxin-antitoxin system yafq family toxin | IZT61_08130 | Q47149 | - | 2041000 - 2041281 | 10884.3 |
| hypothetical protein | IZT61_08135 | Not Available | - | 2041281 - 2041490 | 7614.49 |
| uroporphyrinogen decarboxylase | IZT61_08140 | B3EAR8 | - | 2041549 - 2042574 | 38323.6 |
| hypothetical protein | IZT61_08145 | Not Available | - | 2042770 - 2043285 | 19663.9 |
| response regulator transcription factor | IZT61_08150 | P13792 | - | 2043285 - 2043989 | 27294.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.