Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | IZT61_08055 | Not Available | + | 2024879 - 2026000 | 42260.3 |
| rna polymerase sigma-70 factor | IZT61_08060 | Q45585 | + | 2026372 - 2026977 | 23291.3 |
| fecr domain-containing protein | IZT61_08065 | Not Available | + | 2027069 - 2028265 | 44146.6 |
| tonb-dependent receptor | IZT61_08070 | T2KPJ3 | + | 2028468 - 2031746 | 121021.0 |
| ragb/susd family nutrient uptake outer membrane protein | IZT61_08075 | T2KPM5 | + | 2031757 - 2033466 | 63858.4 |
| abc transporter atp-binding protein | IZT61_08080 | Q2SSS4 | - | 2033557 - 2034549 | 37192.1 |
| dmt family transporter | IZT61_08085 | Not Available | + | 2034663 - 2034934 | 10170.6 |
| dmt family transporter | IZT61_08090 | Not Available | + | 2035221 - 2035467 | 9505.21 |
| hypothetical protein | IZT61_08095 | Not Available | + | 2035623 - 2035880 | 9694.51 |
| pin domain-containing protein | IZT61_08100 | O66399 | + | 2035877 - 2036293 | 15562.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.