Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| branched-chain-amino-acid transaminase | IZT61_07955 | O86428 | + | 2004358 - 2005248 | 33388.2 |
| dihydroxy-acid dehydratase | IZT61_07960 | A6GWT7 | + | 2005420 - 2007102 | 59686.9 |
| orf6n domain-containing protein | IZT61_07965 | Not Available | + | 2007151 - 2007720 | 22351.1 |
| biosynthetic-type acetolactate synthase large subunit | IZT61_07970 | P37251 | + | 2007742 - 2009490 | 63782.7 |
| acetolactate synthase small subunit | IZT61_07975 | P37252 | + | 2009613 - 2010251 | 24547.4 |
| dinb family protein | IZT61_07980 | Not Available | + | 2010396 - 2010860 | 17562.1 |
| ketol-acid reductoisomerase | IZT61_07985 | Q11VZ3 | + | 2011026 - 2012507 | 54340.5 |
| 3-isopropylmalate dehydratase large subunit | IZT61_07990 | Q11NN8 | + | 2012669 - 2014075 | 50828.9 |
| class i sam-dependent methyltransferase | IZT61_07995 | Q73WV2 | + | 2014261 - 2014839 | 21839.1 |
| antibiotic biosynthesis monooxygenase | IZT61_08000 | O31484 | + | 2014840 - 2015130 | 11193.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.