Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| osmc family protein | IZT61_07905 | Not Available | - | 1994411 - 1994791 | 13779.7 |
| ytxh domain-containing protein | IZT61_07910 | Not Available | + | 1995296 - 1995661 | 13125.8 |
| gtpase obge | IZT61_07915 | Q11Z03 | - | 1995874 - 1996872 | 35904.4 |
| adenylate kinase | IZT61_07920 | A6GZB9 | - | 1997131 - 1997700 | 21008.3 |
| sulfatase | IZT61_07925 | Q89YS5 | - | 1998002 - 1999516 | 58044.3 |
| Trna-arg | Not Available | Not Available | + | 1999716 - 1999789 | Not Available |
| redoxin domain-containing protein | IZT61_07935 | P9WIE0 | - | 1999889 - 2000353 | 17090.2 |
| sdr family oxidoreductase | IZT61_07940 | D4GU71 | - | 2000543 - 2001451 | 33344.8 |
| f0f1 atp synthase subunit beta | IZT61_07945 | A0M791 | + | 2001749 - 2003251 | 54118.0 |
| atp synthase f1 subunit epsilon | IZT61_07950 | P35111 | + | 2003331 - 2003576 | 8774.64 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.