Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| susc/raga family tonb-linked outer membrane protein | IZT61_07855 | T2KMI3 | - | 1980503 - 1983709 | 117614.0 |
| signal peptidase i | IZT61_07860 | P00803 | - | 1983963 - 1985159 | 45899.8 |
| 4-hydroxy-tetrahydrodipicolinate reductase | IZT61_07865 | A0LZI4 | - | 1985441 - 1986175 | 27095.3 |
| hypothetical protein | IZT61_07870 | Not Available | - | 1986181 - 1986900 | 26470.0 |
| parb/repb/spo0j family partition protein | IZT61_07875 | Q83AH2 | - | 1986909 - 1987817 | 34010.9 |
| para family protein | IZT61_07880 | P37522 | - | 1987825 - 1988625 | 29402.7 |
| nad(p)h-dependent oxidoreductase | IZT61_07885 | Q9I4D4 | + | 1988805 - 1989326 | 19482.5 |
| acyl-coa thioesterase | IZT61_07890 | P0A0Q8 | - | 1989707 - 1990183 | 17884.9 |
| glycoside hydrolase family 97 protein | IZT61_07895 | G8JZS4 | - | 1990727 - 1992871 | 80671.6 |
| duf2130 domain-containing protein | IZT61_07900 | Not Available | - | 1993076 - 1994326 | 48528.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.