Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| vcbs repeat-containing protein | IZT61_07805 | Q0V9M0 | - | 1964282 - 1967632 | 124617.0 |
| cytochrome c | IZT61_07810 | Not Available | - | 1967678 - 1969009 | 50993.3 |
| redoxin domain-containing protein | IZT61_07815 | P0A619 | - | 1969009 - 1969596 | 21711.6 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | IZT61_07820 | Not Available | - | 1969761 - 1971359 | 58767.6 |
| susc/raga family tonb-linked outer membrane protein | IZT61_07825 | T2KPJ3 | - | 1971379 - 1974735 | 120975.0 |
| hypothetical protein | IZT61_07830 | Not Available | - | 1974956 - 1975513 | 19729.3 |
| rok family protein | IZT61_07835 | Q44406 | - | 1976041 - 1977231 | 42885.1 |
| duf5007 domain-containing protein | IZT61_07840 | Not Available | - | 1977383 - 1978297 | 34825.7 |
| hypothetical protein | IZT61_07845 | Not Available | - | 1978309 - 1978977 | 24776.2 |
| ragb/susd family nutrient uptake outer membrane protein | IZT61_07850 | T2KPM5 | - | 1979001 - 1980491 | 56004.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.