Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| dead/deah box helicase | IZT61_07755 | Q73EU1 | + | 1946652 - 1948520 | 69001.9 |
| alpha-l-fucosidase | IZT61_07760 | Q99LJ1 | + | 1949283 - 1951091 | 67952.0 |
| gxxexxy protein | IZT61_07765 | Not Available | + | 1951191 - 1951598 | 15616.1 |
| bacillithiol biosynthesis cysteine-adding enzyme bshc | IZT61_07770 | A6GZG1 | + | 1951854 - 1953440 | 60323.9 |
| ldh family oxidoreductase | IZT61_07775 | Q9V0D5 | + | 1953851 - 1954936 | 38807.1 |
| hypothetical protein | IZT61_07780 | Not Available | - | 1955163 - 1955312 | 5621.82 |
| alpha-l-fucosidase | IZT61_07785 | Q99KR8 | - | 1955548 - 1956972 | 54192.3 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | IZT61_07790 | Not Available | - | 1957535 - 1959130 | 60347.8 |
| susc/raga family tonb-linked outer membrane protein | IZT61_07795 | T2KM18 | - | 1959144 - 1962392 | 119425.0 |
| vanadium-dependent haloperoxidase | IZT61_07800 | Not Available | - | 1962962 - 1964272 | 49398.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.