Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| septal ring lytic transglycosylase rlpa family protein | IZT61_07705 | Q57092 | - | 1932282 - 1932662 | 13941.9 |
| methionine-r-sulfoxide reductase | IZT61_07710 | Q9C5C8 | - | 1933021 - 1933521 | 18709.3 |
| succinate--coa ligase subunit alpha | IZT61_07715 | P80865 | - | 1933894 - 1934766 | 29841.5 |
| cyanophycinase | IZT61_07720 | P58562 | - | 1935870 - 1936703 | 30177.8 |
| isoaspartyl peptidase/l-asparaginase | IZT61_07725 | Q54WW4 | - | 1936703 - 1937728 | 36081.5 |
| cyanophycinase | IZT61_07730 | P58562 | - | 1937735 - 1938823 | 39087.2 |
| ragb/susd family nutrient uptake outer membrane protein | IZT61_07735 | T2KN63 | - | 1939122 - 1940513 | 50574.1 |
| tonb-dependent receptor | IZT61_07740 | T2KPJ3 | - | 1940525 - 1943836 | 121819.0 |
| fecr family protein | IZT61_07745 | Not Available | - | 1944015 - 1945190 | 43741.2 |
| sigma-70 family rna polymerase sigma factor | IZT61_07750 | Q45585 | - | 1945286 - 1945870 | 22569.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.