Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| duf4249 family protein | IZT61_07555 | Not Available | - | 1894977 - 1895813 | 31797.8 |
| tonb-dependent receptor | IZT61_07560 | Not Available | - | 1895810 - 1898125 | 86514.9 |
| nad-dependent dna ligase liga | IZT61_07565 | Q11VI1 | + | 1898339 - 1900351 | 75630.5 |
| 4-hydroxy-tetrahydrodipicolinate synthase | IZT61_07570 | A6H0M8 | + | 1900517 - 1901404 | 31812.2 |
| alpha/beta hydrolase | IZT61_07575 | P49323 | + | 1901542 - 1902300 | 28075.2 |
| hypothetical protein | IZT61_07580 | Not Available | - | 1902475 - 1903185 | 27282.3 |
| hypothetical protein | IZT61_07585 | Not Available | - | 1903182 - 1903670 | 18213.2 |
| histone h1 | IZT61_07590 | Not Available | - | 1903885 - 1904061 | 6439.73 |
| aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzyme | IZT61_07595 | B0KC20 | - | 1904318 - 1905559 | 46240.9 |
| duf433 domain-containing protein | IZT61_07600 | Not Available | - | 1906084 - 1906326 | 8938.75 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.