Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 1,4-alpha-glucan branching protein glgb | IZT61_07505 | O66936 | - | 1878024 - 1879988 | 75531.3 |
| glycoside hydrolase family 31 protein | IZT61_07510 | Q9F234 | - | 1880047 - 1882509 | 96033.3 |
| tonb-dependent receptor | IZT61_07515 | Not Available | - | 1883073 - 1885958 | 104106.0 |
| penicillin acylase family protein | IZT61_07520 | Q9I4U2 | + | 1886448 - 1888880 | 91886.9 |
| hypothetical protein | IZT61_07525 | Not Available | + | 1888886 - 1889245 | 13208.1 |
| acyl transferase | IZT61_07530 | P19842 | + | 1889268 - 1890248 | 36391.6 |
| transcriptional repressor | IZT61_07535 | P45599 | - | 1890499 - 1890933 | 15933.0 |
| tyrosine--trna ligase | IZT61_07540 | A6LGF1 | - | 1891077 - 1892363 | 47899.4 |
| hypothetical protein | IZT61_07545 | Not Available | + | 1892575 - 1893255 | 26385.7 |
| hypothetical protein | IZT61_07550 | Not Available | + | 1893562 - 1894785 | 45187.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.