Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| n-acetylglucosamine kinase | IZT61_07455 | Q54PM7 | + | 1865040 - 1865900 | 32122.1 |
| nudix hydrolase | IZT61_07460 | Q58549 | - | 1866213 - 1866902 | 26799.7 |
| 6-phosphofructokinase | IZT61_07465 | Q8A624 | + | 1867014 - 1868000 | 35080.3 |
| hypothetical protein | IZT61_07470 | P81799 | + | 1868000 - 1868842 | 31679.3 |
| type i glyceraldehyde-3-phosphate dehydrogenase | IZT61_07475 | B7LQ20 | + | 1868850 - 1869851 | 35653.6 |
| hypothetical protein | IZT61_07480 | A3Q5U0 | - | 1870825 - 1871142 | 12227.9 |
| type ix secretion system membrane protein porp/sprf | IZT61_07485 | Not Available | - | 1871270 - 1872250 | 36510.8 |
| gliding motility-associated c-terminal domain-containing protein | IZT61_07490 | Not Available | - | 1872267 - 1873211 | 34597.6 |
| hypothetical protein | IZT61_07495 | Not Available | - | 1873241 - 1873930 | 24141.5 |
| duf11 domain-containing protein | IZT61_07500 | Not Available | - | 1873962 - 1876805 | 97924.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.