Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | IZT61_07405 | Not Available | + | 1853228 - 1854370 | 43006.5 |
| duf4268 domain-containing protein | IZT61_07410 | Not Available | - | 1854429 - 1854890 | 18046.4 |
| sugar phosphate isomerase/epimerase | IZT61_07415 | Q9WYP7 | - | 1855329 - 1856195 | 31430.4 |
| glycoside hydrolase family 78 protein | IZT61_07420 | Q82PP4 | - | 1856277 - 1858919 | 97596.5 |
| hipa domain-containing protein | IZT61_07425 | P44033 | - | 1859070 - 1860023 | 36487.0 |
| hipa n-terminal domain-containing protein | IZT61_07430 | P44034 | - | 1860016 - 1860348 | 12735.4 |
| helix-turn-helix transcriptional regulator | IZT61_07435 | Not Available | - | 1860345 - 1860566 | 8143.87 |
| riboflavin synthase | IZT61_07440 | P50854 | - | 1860693 - 1861277 | 21374.3 |
| acetyl-coa carboxylase biotin carboxylase subunit | IZT61_07445 | Q58626 | - | 1861465 - 1862982 | 55850.9 |
| threonine aldolase | IZT61_07450 | O07051 | - | 1863799 - 1864821 | 36709.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.