Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| methylated-dna--[protein]-cysteine s-methyltransferase | IZT61_07355 | P06134 | + | 1845533 - 1846375 | 31540.6 |
| metal-binding protein | IZT61_07360 | Not Available | + | 1846376 - 1846624 | 9505.75 |
| alpha-ketoglutarate-dependent dioxygenase alkb | IZT61_07365 | Q6P6J4 | + | 1846600 - 1847208 | 23168.6 |
| hypothetical protein | IZT61_07370 | Not Available | - | 1848560 - 1849351 | 29579.3 |
| gnat family n-acetyltransferase | IZT61_07375 | Q9HX72 | + | 1849874 - 1850407 | 20259.2 |
| alkylphosphonate utilization protein | IZT61_07380 | P0AFJ3 | + | 1850440 - 1850652 | 7601.31 |
| meta domain-containing protein | IZT61_07385 | Not Available | + | 1850756 - 1851154 | 14618.8 |
| yihy/virulence factor brkb family protein | IZT61_07390 | Not Available | + | 1851214 - 1852140 | 34660.1 |
| port family protein | IZT61_07395 | Not Available | - | 1852182 - 1852772 | 21276.4 |
| hypothetical protein | IZT61_07400 | Not Available | - | 1852797 - 1853093 | 11358.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.