Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit | IZT61_07255 | Q31LB7 | + | 1823075 - 1824187 | 41005.8 |
| abc transporter atp-binding protein | IZT61_07260 | Q1BWI2 | + | 1824574 - 1825338 | 28352.1 |
| abc transporter permease | IZT61_07265 | Q8T674 | + | 1825408 - 1826553 | 41501.5 |
| hypothetical protein | IZT61_07270 | Not Available | + | 1827108 - 1827791 | 25765.7 |
| helix-turn-helix transcriptional regulator | IZT61_07275 | P40950 | - | 1827962 - 1828537 | 22053.6 |
| hypothetical protein | IZT61_07280 | Not Available | - | 1828539 - 1828949 | 14475.5 |
| phenylalanine--trna ligase subunit alpha | IZT61_07285 | A6LA92 | - | 1828949 - 1829989 | 39358.0 |
| glycine c-acetyltransferase | IZT61_07290 | P0AB78 | - | 1830617 - 1831804 | 43307.2 |
| carboxypeptidase-like regulatory domain-containing protein | IZT61_07295 | Q8A1G1 | + | 1832035 - 1834482 | 94036.9 |
| rhodanese-related sulfurtransferase | IZT61_07300 | Q11RM1 | + | 1834732 - 1835673 | 35255.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.