Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| response regulator transcription factor | IZT61_07205 | Q4L6C6 | + | 1806808 - 1807485 | 25910.1 |
| hamp domain-containing histidine kinase | IZT61_07210 | Q49ZT9 | + | 1807920 - 1809224 | 49602.0 |
| chromosome partitioning protein para | IZT61_07215 | Not Available | + | 1809279 - 1811183 | 73953.5 |
| hypothetical protein | IZT61_07220 | Not Available | - | 1812305 - 1812934 | 22416.9 |
| tonb-dependent receptor | IZT61_07225 | T2KPJ3 | + | 1813344 - 1816256 | 105583.0 |
| ragb/susd family nutrient uptake outer membrane protein | IZT61_07230 | T2KN63 | + | 1816268 - 1817683 | 51994.1 |
| glucosylceramidase | IZT61_07235 | Q7M4T0 | + | 1817864 - 1819303 | 52183.7 |
| hypothetical protein | IZT61_07240 | Not Available | + | 1820341 - 1820814 | 17026.1 |
| rlua family pseudouridine synthase | IZT61_07245 | Q9KQH0 | - | 1820845 - 1821531 | 26189.8 |
| 3-methyl-2-oxobutanoate hydroxymethyltransferase | IZT61_07250 | Q11Q55 | - | 1821798 - 1822613 | 29540.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.