Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| thioredoxin | IZT61_07155 | P0A4L1 | - | 1794151 - 1794471 | 11719.3 |
| dna polymerase iii subunit alpha | IZT61_07160 | O51526 | - | 1794777 - 1799210 | 167058.0 |
| malate dehydrogenase | IZT61_07165 | Q8A0W0 | + | 1799765 - 1800703 | 32817.1 |
| aspartyl protease family protein | IZT61_07170 | Not Available | + | 1800936 - 1801361 | 15855.4 |
| group iii truncated hemoglobin | IZT61_07175 | Q0PB48 | + | 1801367 - 1801762 | 15181.4 |
| hypothetical protein | IZT61_07180 | Not Available | + | 1801823 - 1802071 | 9381.55 |
| srpbcc family protein | IZT61_07185 | Not Available | + | 1802102 - 1802362 | 9684.74 |
| response regulator transcription factor | IZT61_07190 | P0AD00 | + | 1802518 - 1803192 | 24969.6 |
| hamp domain-containing protein | IZT61_07195 | Q4L6C5 | + | 1803196 - 1804551 | 51196.2 |
| aspartate aminotransferase family protein | IZT61_07200 | Q58131 | + | 1805333 - 1806529 | 43653.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.