Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| c40 family peptidase | IZT61_07055 | Q736M3 | - | 1771965 - 1773164 | 44366.6 |
| cap domain-containing protein | IZT61_07060 | Not Available | + | 1773315 - 1774004 | 26668.7 |
| gtra family protein | IZT61_07065 | Not Available | + | 1774175 - 1774597 | 16221.3 |
| aromatic amino acid hydroxylase | IZT61_07070 | P30967 | + | 1775147 - 1776916 | 66463.3 |
| sdr family oxidoreductase | IZT61_07075 | Q6G6J1 | + | 1777877 - 1778578 | 25064.5 |
| duf4870 domain-containing protein | IZT61_07080 | Not Available | + | 1778664 - 1779026 | 13170.4 |
| c40 family peptidase | IZT61_07085 | P96645 | + | 1779146 - 1779691 | 20199.6 |
| ydei/ompd-associated family protein | IZT61_07090 | P96666 | - | 1779774 - 1780379 | 23207.1 |
| flavin reductase family protein | IZT61_07095 | O67071 | - | 1780405 - 1781292 | 32592.5 |
| fumarylacetoacetate hydrolase family protein | IZT61_07100 | Q96GK7 | - | 1781496 - 1782491 | 36667.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.