Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| atp-binding protein | IZT61_07005 | Q5HN49 | - | 1762303 - 1763088 | 30125.6 |
| hypothetical protein | IZT61_07010 | Not Available | - | 1763067 - 1763717 | 25894.9 |
| hypothetical protein | IZT61_07015 | Not Available | - | 1763731 - 1764366 | 24300.3 |
| s8 family serine peptidase | IZT61_07020 | P00780 | + | 1764629 - 1766020 | 49068.1 |
| hypothetical protein | IZT61_07025 | Not Available | + | 1766025 - 1766228 | 7474.07 |
| glycine--trna ligase | IZT61_07030 | Q8KAB1 | + | 1766616 - 1768259 | 63575.4 |
| mutarotase | IZT61_07035 | Not Available | + | 1768350 - 1769030 | 26208.3 |
| thua domain-containing protein | IZT61_07040 | Not Available | + | 1769140 - 1769976 | 32117.1 |
| helix-turn-helix transcriptional regulator | IZT61_07045 | O34901 | + | 1770068 - 1770475 | 15806.9 |
| sdr family oxidoreductase | IZT61_07050 | Q49117 | + | 1770561 - 1771325 | 26824.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.