Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | IZT61_00660 | Not Available | + | 142475 - 142984 | 18765.7 |
| copper homeostasis protein cutc | IZT61_00665 | Q7NY61 | - | 143016 - 143783 | 27461.2 |
| n(4)-(beta-n-acetylglucosaminyl)-l-asparaginase | IZT61_00670 | Q47898 | - | 143913 - 144947 | 37286.9 |
| nitrilase family protein | IZT61_00675 | Q47679 | - | 145197 - 146000 | 31367.5 |
| methionine aminotransferase | IZT61_00680 | P77806 | - | 146023 - 147168 | 43077.1 |
| duf2271 domain-containing protein | IZT61_00685 | P44550 | + | 147400 - 148929 | 55812.5 |
| pepsy-associated tm helix domain-containing protein | IZT61_00690 | Not Available | + | 149045 - 149584 | 19877.3 |
| multidrug effflux mfs transporter | IZT61_00695 | P28246 | - | 149709 - 150935 | 43809.7 |
| queuosine precursor transporter | IZT61_00700 | P54163 | + | 151678 - 152448 | 28746.9 |
| duf4065 domain-containing protein | IZT61_00705 | Not Available | + | 152506 - 153303 | 30693.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.