Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| rna methyltransferase | IZT61_06905 | P94538 | + | 1744642 - 1745388 | 27366.1 |
| Trna-cys | Not Available | Not Available | + | 1745458 - 1745531 | Not Available |
| spore protein | IZT61_06915 | Not Available | + | 1745566 - 1745736 | 6273.59 |
| fe-s protein assembly chaperone hsca | IZT61_06920 | Q98DD1 | + | 1746039 - 1747895 | 67836.1 |
| hypothetical protein | IZT61_06925 | Not Available | + | 1748265 - 1748660 | 14427.1 |
| llm class flavin-dependent oxidoreductase | IZT61_06930 | Q53218 | + | 1748766 - 1749797 | 38189.0 |
| duf4395 domain-containing protein | IZT61_06935 | Not Available | - | 1749998 - 1750435 | 16216.6 |
| hypothetical protein | IZT61_06940 | Not Available | + | 1750569 - 1750931 | 13071.5 |
| s1/p1 nuclease | IZT61_06945 | Not Available | + | 1750954 - 1751910 | 36530.8 |
| deda family protein | IZT61_06950 | P0ABP7 | - | 1752094 - 1752774 | 25337.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.