Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| imidazole glycerol phosphate synthase subunit hish | IZT61_06805 | Q8A7Z4 | + | 1719795 - 1720388 | 21588.9 |
| 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase | IZT61_06810 | A3CNT1 | + | 1720390 - 1721139 | 28076.1 |
| imidazole glycerol phosphate synthase subunit hisf | IZT61_06815 | A0M283 | + | 1721274 - 1722029 | 27270.9 |
| bifunctional phosphoribosyl-amp cyclohydrolase/phosphoribosyl-atp diphosphatase hisie | IZT61_06820 | P06989 | + | 1722138 - 1722740 | 22635.1 |
| wd40 repeat domain-containing protein | IZT61_06825 | Q86HX1 | + | 1722981 - 1723880 | 34222.6 |
| dmt family transporter | IZT61_06830 | Not Available | - | 1723877 - 1724334 | 16415.2 |
| hypothetical protein | IZT61_06835 | Not Available | - | 1724334 - 1724540 | 8192.19 |
| hypothetical protein | IZT61_06840 | Not Available | - | 1725058 - 1727136 | 77619.1 |
| efflux rnd transporter periplasmic adaptor subunit | IZT61_06845 | P13510 | - | 1727614 - 1728885 | 45760.0 |
| tolc family protein | IZT61_06850 | P13509 | - | 1728888 - 1730306 | 53687.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.