Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | IZT61_06755 | Not Available | - | 1708353 - 1709021 | 25557.7 |
| dihydroorotase | IZT61_06760 | B9M4S4 | - | 1709091 - 1710347 | 45136.1 |
| bata and wfa domain-containing protein | IZT61_06765 | Not Available | - | 1710344 - 1712383 | 75453.8 |
| hypothetical protein | IZT61_06770 | Not Available | - | 1712420 - 1712584 | 6418.9 |
| hypothetical protein | IZT61_06775 | Not Available | - | 1712612 - 1713016 | 15138.2 |
| l,d-transpeptidase family protein | IZT61_06780 | P22525 | - | 1713035 - 1714597 | 60020.1 |
| atp phosphoribosyltransferase | IZT61_06785 | Q11TY6 | + | 1714874 - 1715725 | 30801.5 |
| histidinol dehydrogenase | IZT61_06790 | Q8ABA9 | + | 1715786 - 1717093 | 46883.2 |
| histidinol-phosphate transaminase | IZT61_06795 | Q11VM5 | + | 1717415 - 1718455 | 38873.4 |
| bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase hisb | IZT61_06800 | D2QPE6 | + | 1718459 - 1719592 | 42409.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.