Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| rip metalloprotease rsep | IZT61_06705 | O67776 | - | 1699103 - 1700503 | 51274.2 |
| 1-deoxy-d-xylulose-5-phosphate reductoisomerase | IZT61_06710 | Q8A684 | - | 1700532 - 1701692 | 42437.6 |
| gh3 auxin-responsive promoter family protein | IZT61_06715 | A0A1J6KGJ9 | - | 1701853 - 1703352 | 56357.5 |
| duf5615 family pin-like protein | IZT61_06720 | Not Available | - | 1703540 - 1703896 | 13639.4 |
| duf433 domain-containing protein | IZT61_06725 | Not Available | - | 1703893 - 1704129 | 8743.74 |
| hypothetical protein | IZT61_06730 | Not Available | - | 1704308 - 1705135 | 31356.5 |
| glycosyltransferase | IZT61_06735 | H2K893 | - | 1705132 - 1706100 | 37153.0 |
| glycosyltransferase family 2 protein | IZT61_06740 | Q1MJ95 | - | 1706263 - 1707213 | 36113.0 |
| type ii toxin-antitoxin system hicb family antitoxin | IZT61_06745 | P74458 | - | 1707411 - 1707650 | 8832.6 |
| duf4199 domain-containing protein | IZT61_06750 | Not Available | - | 1707767 - 1708336 | 20697.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.