Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | IZT61_06605 | Not Available | + | 1669093 - 1670463 | 51132.3 |
| discoidin domain-containing protein | IZT61_06610 | Not Available | + | 1670520 - 1671446 | 32905.7 |
| ahpc/tsa family protein | IZT61_06615 | P35160 | + | 1671479 - 1672612 | 42184.6 |
| ahpc/tsa family protein | IZT61_06620 | Q73B22 | + | 1672645 - 1673760 | 41102.6 |
| beta-galactosidase | IZT61_06625 | T2KPJ7 | - | 1674052 - 1676130 | 78636.0 |
| discoidin domain-containing protein | IZT61_06630 | Q02834 | - | 1676150 - 1677748 | 58943.3 |
| right-handed parallel beta-helix repeat-containing protein | IZT61_06635 | P0DW93 | - | 1677932 - 1679371 | 53739.6 |
| ragb/susd family nutrient uptake outer membrane protein | IZT61_06640 | T2KN63 | - | 1679456 - 1681183 | 64534.1 |
| tonb-dependent receptor | IZT61_06645 | T2KPJ3 | - | 1681192 - 1684254 | 112657.0 |
| ragb/susd family nutrient uptake outer membrane protein | IZT61_06650 | T2KN63 | - | 1684298 - 1685932 | 61474.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.