Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 88 protein | IZT61_06555 | O34559 | - | 1645950 - 1647053 | 42939.5 |
| sulfatase | IZT61_06560 | T2KN90 | - | 1647100 - 1648569 | 55284.3 |
| histidine kinase | IZT61_06565 | T2KMF4 | + | 1649063 - 1652233 | 119705.0 |
| response regulator | IZT61_06570 | T2KMF4 | + | 1652236 - 1653009 | 29395.5 |
| ragb/susd family nutrient uptake outer membrane protein | IZT61_06575 | T2KNB8 | - | 1654435 - 1656108 | 61897.1 |
| tonb-dependent receptor | IZT61_06580 | T2KPJ3 | - | 1656119 - 1659178 | 111946.0 |
| hypothetical protein | IZT61_06585 | P42592 | - | 1659725 - 1662544 | 107437.0 |
| rna polymerase sigma-70 factor | IZT61_06590 | P23484 | + | 1663318 - 1663911 | 22987.8 |
| fecr family protein | IZT61_06595 | Not Available | + | 1664008 - 1665195 | 44163.7 |
| susc/raga family tonb-linked outer membrane protein | IZT61_06600 | T2KPJ3 | + | 1665445 - 1669080 | 133401.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.