Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| fad/nad(p)-binding protein | IZT61_06355 | P77148 | + | 1577496 - 1579244 | 64744.5 |
| response regulator transcription factor | IZT61_06360 | Q49XM7 | - | 1579611 - 1579976 | 13571.6 |
| pas domain-containing protein | IZT61_06365 | Q45614 | - | 1579969 - 1581513 | 58538.2 |
| gfo/idh/moca family oxidoreductase | IZT61_06370 | Q6DF30 | - | 1581901 - 1582962 | 38860.9 |
| tim barrel protein | IZT61_06375 | Not Available | - | 1583163 - 1584080 | 34060.9 |
| duf2254 domain-containing protein | IZT61_06380 | P9WM35 | + | 1584616 - 1585854 | 46033.4 |
| glycosyltransferase | IZT61_06385 | P9WMY8 | + | 1586233 - 1587318 | 40221.1 |
| hypothetical protein | IZT61_06390 | Not Available | + | 1587302 - 1588372 | 39957.4 |
| glycosyltransferase | IZT61_06395 | Q7BLV3 | - | 1588358 - 1589179 | 30944.1 |
| helix-turn-helix domain-containing protein | IZT61_06400 | Not Available | - | 1590161 - 1590721 | 21068.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.