Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | IZT61_06205 | Q6FLP9 | - | 1533985 - 1535190 | 45306.5 |
| suse domain-containing protein | IZT61_06210 | Not Available | - | 1535243 - 1536367 | 40172.2 |
| ragb/susd family nutrient uptake outer membrane protein | IZT61_06215 | T2KN63 | - | 1536379 - 1538004 | 60173.9 |
| tonb-dependent receptor | IZT61_06220 | T2KM18 | - | 1538028 - 1541180 | 114973.0 |
| sugar porter family mfs transporter | IZT61_06225 | P96710 | - | 1541244 - 1542671 | 51807.4 |
| class i mannose-6-phosphate isomerase | IZT61_06230 | O05511 | - | 1542676 - 1544451 | 67195.5 |
| alpha-glucuronidase | IZT61_06235 | B3PC73 | - | 1545232 - 1547385 | 80375.5 |
| glycosyl hydrolase 115 family protein | IZT61_06240 | Not Available | - | 1547406 - 1549481 | 78927.1 |
| sulfite exporter taue/safe family protein | IZT61_06245 | Not Available | - | 1549724 - 1550425 | 25856.3 |
| fixh family protein | IZT61_06250 | Not Available | - | 1550422 - 1550850 | 16219.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.