Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| duf3892 domain-containing protein | IZT61_06155 | Not Available | - | 1519248 - 1519403 | 5582.57 |
| endonuclease v | IZT61_06160 | Not Available | - | 1519689 - 1520186 | 18981.3 |
| hypothetical protein | IZT61_06165 | Not Available | - | 1520186 - 1520521 | 13268.4 |
| hypothetical protein | IZT61_06170 | Not Available | - | 1520542 - 1523856 | 128067.0 |
| hypothetical protein | IZT61_06175 | Not Available | - | 1523856 - 1525997 | 78612.4 |
| hypothetical protein | IZT61_06180 | Not Available | - | 1526025 - 1527875 | 67540.3 |
| amidase | IZT61_06185 | Not Available | - | 1527978 - 1528811 | 32124.6 |
| rok family protein | IZT61_06190 | Q0T5R7 | - | 1529555 - 1530412 | 30549.6 |
| age family epimerase/isomerase | IZT61_06195 | P36091 | - | 1530414 - 1531595 | 45667.1 |
| gh92 family glycosyl hydrolase | IZT61_06200 | O86365 | - | 1531611 - 1533965 | 86736.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.