Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| mfs transporter | IZT61_06055 | O34546 | + | 1488595 - 1489827 | 45197.7 |
| family 43 glycosylhydrolase | IZT61_06060 | P49943 | - | 1490099 - 1491079 | 36664.6 |
| dipeptidase | IZT61_06065 | Q96KP4 | - | 1491496 - 1492866 | 50407.0 |
| ph domain-containing protein | IZT61_06070 | Not Available | + | 1492991 - 1493530 | 19894.7 |
| ph domain-containing protein | IZT61_06075 | P96616 | + | 1493531 - 1495030 | 56851.0 |
| gntr family transcriptional regulator | IZT61_06080 | O34817 | + | 1495203 - 1495931 | 28048.8 |
| hypothetical protein | IZT61_06085 | Not Available | - | 1495965 - 1496198 | 8763.85 |
| hypothetical protein | IZT61_06090 | Q17060 | - | 1496318 - 1497391 | 40500.5 |
| hypothetical protein | IZT61_06095 | Not Available | - | 1497442 - 1497732 | 9959.71 |
| hypothetical protein | IZT61_06100 | Not Available | - | 1497753 - 1498109 | 12997.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.