Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| l-histidine n(alpha)-methyltransferase | IZT61_05955 | A0R5M8 | - | 1465225 - 1466208 | 36851.5 |
| ergothioneine biosynthesis protein egtb | IZT61_05960 | Q7D513 | - | 1466213 - 1467361 | 44863.4 |
| abc transporter permease/substrate-binding protein | IZT61_05965 | Q45461 | - | 1467361 - 1468932 | 57430.0 |
| abc transporter atp-binding protein | IZT61_05970 | O34992 | - | 1468929 - 1469876 | 35713.3 |
| mercuric reductase | IZT61_05975 | P77212 | - | 1469880 - 1471259 | 50064.3 |
| heme-binding protein | IZT61_05980 | P45517 | + | 1471410 - 1471811 | 13816.5 |
| nipsnap family protein | IZT61_05985 | Not Available | - | 1472067 - 1472819 | 28727.3 |
| smp-30/gluconolactonase/lre family protein | IZT61_05990 | Q01578 | - | 1473203 - 1474090 | 33053.1 |
| hypothetical protein | IZT61_05995 | Not Available | + | 1474202 - 1474645 | 16777.9 |
| abc transporter atp-binding protein | IZT61_06000 | Q9WYC4 | - | 1474746 - 1476506 | 65138.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.