Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| dna topoisomerase iii | IZT61_05805 | Q81IH1 | + | 1436841 - 1438691 | 68909.5 |
| aaa family atpase | IZT61_05810 | P38935 | - | 1439049 - 1440959 | 70959.9 |
| duf3037 domain-containing protein | IZT61_05815 | Not Available | - | 1441494 - 1441877 | 14645.7 |
| aminotransferase class i and ii | IZT61_05820 | Not Available | - | 1441855 - 1442646 | 30044.0 |
| hypothetical protein | IZT61_05825 | Not Available | - | 1442849 - 1443037 | 6909.12 |
| hypothetical protein | IZT61_05830 | Not Available | + | 1443146 - 1443526 | 15323.9 |
| ktsc domain-containing protein | IZT61_05835 | B2J384 | + | 1443549 - 1443752 | 7966.59 |
| endonuclease | IZT61_05840 | Q8K203 | + | 1443754 - 1444491 | 28839.1 |
| isopentenyl-diphosphate delta-isomerase | IZT61_05845 | Q5NWG5 | - | 1444773 - 1445291 | 19965.6 |
| squalene/phytoene synthase family protein | IZT61_05850 | P54977 | - | 1445296 - 1446132 | 32461.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.