Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| ubix family flavin prenyltransferase | IZT61_05610 | O58742 | - | 1397121 - 1397690 | 20812.1 |
| glycoside hydrolase family 43 protein | IZT61_05615 | Q82P90 | - | 1398088 - 1399116 | 38738.8 |
| crp/fnr family transcriptional regulator | IZT61_05620 | Not Available | - | 1399199 - 1399822 | 24251.2 |
| oxygen-dependent coproporphyrinogen oxidase | IZT61_05625 | P72848 | - | 1400379 - 1401272 | 34757.0 |
| elongation factor 4 | IZT61_05630 | A5FLU8 | + | 1401511 - 1403298 | 66564.7 |
| bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase | IZT61_05635 | A6L2G2 | + | 1403384 - 1404265 | 31934.8 |
| hypothetical protein | IZT61_05640 | Not Available | + | 1404513 - 1404776 | 10012.8 |
| dmt family transporter | IZT61_05645 | Not Available | + | 1404777 - 1405194 | 15730.0 |
| duf1398 family protein | IZT61_05650 | Not Available | - | 1405324 - 1405719 | 14786.1 |
| galactose mutarotase | IZT61_05655 | P05149 | - | 1405722 - 1406768 | 38697.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.