Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | IZT61_05560 | Not Available | - | 1388604 - 1389221 | 23147.8 |
| hypothetical protein | IZT61_05565 | Not Available | - | 1389197 - 1389370 | 6512.94 |
| Tmrna,resume consensus sequence (at 89): tttagttggcgaaaatac | Not Available | Not Available | + | 1389523 - 1389888 | Not Available |
| hypothetical protein | IZT61_05575 | Not Available | + | 1390079 - 1390318 | 9310.82 |
| hypothetical protein | IZT61_05580 | Not Available | + | 1390513 - 1391661 | 42391.6 |
| hypothetical protein | IZT61_05585 | Not Available | + | 1391844 - 1392395 | 21068.3 |
| endonuclease/exonuclease/phosphatase family protein | IZT61_05590 | Not Available | - | 1392430 - 1393140 | 26225.4 |
| sdr family oxidoreductase | IZT61_05595 | Q9Y7K4 | + | 1393584 - 1394477 | 31893.1 |
| helix-turn-helix transcriptional regulator | IZT61_05600 | Q56143 | + | 1394490 - 1395410 | 35107.2 |
| trna (n(6)-l-threonylcarbamoyladenosine(37)-c(2))- methylthiotransferase mtab | IZT61_05605 | P54462 | - | 1395657 - 1396979 | 49856.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.