Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| magnesium transporter | IZT61_05260 | Q5SMG8 | - | 1315317 - 1316693 | 51140.6 |
| uvrd-helicase domain-containing protein | IZT61_05265 | Q5HN29 | + | 1317807 - 1320104 | 87177.8 |
| chromosome segregation protein smc | IZT61_05270 | Q8KBS6 | + | 1320812 - 1324351 | 135406.0 |
| outer membrane lipoprotein carrier protein lola | IZT61_05275 | Not Available | - | 1325002 - 1325652 | 24348.3 |
| dna translocase ftsk 4tm domain-containing protein | IZT61_05280 | Q8KBK0 | - | 1325711 - 1328308 | 96665.1 |
| ankyrin repeat domain-containing protein | IZT61_05285 | Q04749 | + | 1328876 - 1329529 | 23394.3 |
| pspc family transcriptional regulator | IZT61_05290 | Not Available | - | 1329700 - 1329918 | 8594.77 |
| duf2851 family protein | IZT61_05295 | Not Available | - | 1330646 - 1331941 | 49358.5 |
| Trna-gly | Not Available | Not Available | + | 1332157 - 1332229 | Not Available |
| Trna-leu | Not Available | Not Available | + | 1332302 - 1332385 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.