Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| duf3298 domain-containing protein | IZT61_05210 | Not Available | + | 1305337 - 1306500 | 43788.2 |
| 3-oxoacyl-acp synthase | IZT61_05215 | Not Available | - | 1306679 - 1307140 | 17006.3 |
| nitroreductase | IZT61_05220 | O31571 | - | 1307247 - 1307822 | 21715.3 |
| hypothetical protein | IZT61_05225 | Not Available | - | 1308058 - 1308615 | 21343.9 |
| abc transporter atp-binding protein | IZT61_05230 | P77265 | + | 1308709 - 1310499 | 67977.0 |
| duf3276 family protein | IZT61_05235 | Not Available | + | 1310578 - 1310901 | 12751.8 |
| hypothetical protein | IZT61_05240 | Not Available | - | 1311123 - 1311587 | 16774.9 |
| redox-regulated atpase ychf | IZT61_05245 | P44681 | + | 1311937 - 1313037 | 40167.1 |
| dmt family transporter | IZT61_05250 | Not Available | - | 1313814 - 1313912 | 2555.76 |
| had hydrolase-like protein | IZT61_05255 | Not Available | - | 1314693 - 1315307 | 23543.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.